51 to 60 of 142,139 Results
ZIP Archive - 314.4 KB -
MD5: a5614357a2aa2f915298e1b113aecd8a
Peptide sequences identified with the group specific FDR estimation. This file contains .csv files of peptide sequences filtered for 1% FDR identified with the group specific FDR estimation combined strategy using either MW filtered, MW-RT filtered or MW-RT-HLA-I binding filtered reference databases, respectively. Furthermore, peptide sequences ide... |
MS Excel Spreadsheet - 54.9 KB -
MD5: 07ac6d02e874305e8dfb21f439a72ff1
Ratios of nonspecific/tryptic peptides in K562 cell line. An .xlsx table, reporting the numbers of unique peptides in GENCODE-informed and RNA-seq informed strata, across filtering steps. Includes the ratios of nonspecific/tryptic peptide counts. |
MS Excel Spreadsheet - 206.1 KB -
MD5: 6c277adf5086dcd71eca9728509e657a
Gene fusion detection in K562 cell line. An .xlsx table, derived from the Arriba gene fusion detection tool, reporting the identified gene fusions and corresponding biological replicates of K562 cells. |
MS Excel Spreadsheet - 77.8 KB -
MD5: 976c9c2f80056769fb6277ef289fa6ad
703 PTMs investigated in Fig. 2d and Supplementary Fig. 3e. PTMs from Unimod database in tabular format. |
MS Excel Spreadsheet - 403.7 KB -
MD5: fd37a2246d94884debcbb9c3765b7a72
PTM-peptide forms per protein. Number of unmodified peptides and PTM combinations in unfiltered search spaces and upon molecular weight filter. |
MS Excel Spreadsheet - 168.7 KB -
MD5: 99ff04cc6e8fd97f876f940815b0fbd9
Strata search space sizes across SPIsnake filtering steps in K562. Number of unique peptides derived by tryptic or proteasomal digestion from RNA-seq informed and uninformed search spaces for all peptide lengths. Strata reduction during data-driven filtering is reported for K562-A*02:01 and K562-B*07:02 cell lines. |
MS Excel Spreadsheet - 203.2 KB -
MD5: 0f50896c90c01c7711b000f076eafff1
IC50 cutoffs. Reported are the numbers of peptides identified in PEAKS search of K562 HLA-I immunopeptidome at 1% FDR, upon 5000 nM cut-off. The absolute and relative quantities are reported per haplotype and peptide length and as a summary. |
MS Excel Spreadsheet - 2.4 MB -
MD5: d89d0e9bf862155347f074739c2d0e40
Number of unique cis-spliced and non-spliced peptides per protein length, peptide length and maximum intervening sequence length. The figures refer to peptides either unfiltered, filtered based on molecular weight (MW filtered), additionally filtered by retention time prediction (MW-RT-filtered), or additionally filtered by HLA-I-peptide binding af... |
Jul 18, 2025
Krueger, Matteo; Berkemeier, Thomas, 2025, "Code and data for 'Improved vapor pressure predictions using group contribution-assisted graph convolutional neural networks (GC2NN)'", https://doi.org/10.17617/3.GIKHJL, Edmond, V2
We propose a novel approach to predict saturation vapor pressures using group contribution-assisted graph convolutional neural networks (GC2NN), which use both, molecular descriptors like molar mass and functional group counts, as well as molecular graphs containing atom and bond features, as representations of molecular structure. Molecular graphs... |
Jul 18, 2025 -
Code and data for 'Improved vapor pressure predictions using group contribution-assisted graph convolutional neural networks (GC2NN)'
Windows Executable - 182.2 MB -
MD5: da088f6eba8c69fc58c9b4bee119601c
Executable model application for Windows |
